Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Embryo
Cell type
Pre-hematopoietic stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic day 10.5 major arteries PreHSC
strain
B6129SF1
tissue
AGM
age
Embryonic day 11.5
chip antibody
H3K27ac (ab4729, Abcam)
cell type
major arteries PreHSC

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
5 stages of hematopoietic stem and progenitor cells were sorted from mouse embryos or adult bone marrow. ChIP reactions were performed using 20,000 FACS-sorted cells. Iped and Input DNA were purified with MinElute PCR Purification Kit. Libraries were constructed using Rubicom ThruPLEX DNA-Seq Kit. Libraries were size-selected at 100-700 bp by AMPure XP beads. Libraries were quantified with KAPA qPCR and bioanalyzer prior to single-end sequencing.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
29017754
Reads aligned (%)
96.2
Duplicates removed (%)
23.6
Number of peaks
1515 (qval < 1E-05)

mm9

Number of total reads
29017754
Reads aligned (%)
96.0
Duplicates removed (%)
23.7
Number of peaks
658 (qval < 1E-05)

Base call quality data from DBCLS SRA