Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MED1

Cell type

Cell type Class
Muscle
Cell type
Myoblasts
MeSH Description
Embryonic (precursor) cells of the myogenic lineage that develop from the MESODERM. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes (MYOCYTES, SKELETAL; MYOCYTES, CARDIAC; MYOCYTES, SMOOTH MUSCLE).

Attributes by original data submitter

Sample

source_name
Skeletal myoblast
chip-seq antibody
Med1/TRAP220
antibody catalog number
Bethyl A300-793A-2
cll type
Skeletal myoblast

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Whole cell extracts were sonicated to solubilize the chromatin. The chromatin extracts containing DNA fragments with an average size of 500 bp were immunoprecipitated using different antibodies. Purified immunoprecipitated DNA were prepared for sequencing according to a modified version of the Solexa Genomic DNA protocol. Fragmented DNA was end repaired and subjected to 18 cycles of LM-PCR using oligos provided by Illumina. Amplified fragments between 150 and 300bp (representing shear fragments between 50 and 200nt in length and ~100bp of primer sequence) were isolated by agarose gel electrophoresis and purified.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
31562123
Reads aligned (%)
59.8
Duplicates removed (%)
35.9
Number of peaks
22741 (qval < 1E-05)

hg38

Number of total reads
31562123
Reads aligned (%)
61.0
Duplicates removed (%)
35.0
Number of peaks
22770 (qval < 1E-05)

Base call quality data from DBCLS SRA