Antigen

Antigen Class

TFs and others

Antigen

Onecut1

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

source_name

liver tissue

strain

ICR (CD-1)

Sex

female

tissue

liver

age

7-8 weeks old

antibody manufacturer

Santa Cruz Biotechnology, Inc

antibody catalog number

sc-13050

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Liver tissue was homogenized. Nuclei then isolated, cross-linked with formaldehyde and sonicated. Multiplexed samples were prepared for Illumina sequencing at the MIT BioMicroCenter using standard library preparation methods.

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

mm10

Number of total reads

8296332

Reads aligned (%)

93.6

Duplicates removed (%)

61.9

Number of peaks

7325 (qval < 1E-05)

mm9

Number of total reads

8296332

Reads aligned (%)

92.9

Duplicates removed (%)

62.4

Number of peaks

7328 (qval < 1E-05)