Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K79me2

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP
cell line
LNCaP
tissue
Prostate cell line
chip antibody
H3K79me2 (Abcam; ab177184)
treatment
DMSO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed with formaldehyde and lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Barcoded sequencing libraries were generated using KAPA Library Preparation Kits (Kapa Biosystems) according to the manufacturer's protocol. Libraries were quantified using a qPCR-based quantification (Kapa Biosystems).

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
20951630
Reads aligned (%)
98.7
Duplicates removed (%)
4.7
Number of peaks
691 (qval < 1E-05)

hg19

Number of total reads
20951630
Reads aligned (%)
98.2
Duplicates removed (%)
5.3
Number of peaks
677 (qval < 1E-05)

Base call quality data from DBCLS SRA