Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
lung vasculature CD8 memory T cells
cell type
lung vasculature CD8 memory T cells
sorting markers
Live/Dead- CD8+ CD44hi FluNP366-374Db+ CD45.2(IV label)+
strain
C57BL/6J
organ
Lung
stimulation
35 days post Influenza X31 infection

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
1,000 cells were centrifuged for 10 minutes at 500xg and resuspended in 25 ul of Tagmentation Reaction mix (1x TD Buffer, 2.5 ul Tn5 Transpoase, 0.2% Digitonin) and incubating for 60 minutes at 37°C. DNA was purified and amplified into a sequencing library with KAPA HiFi Polymerase and the Nextera Indexing Kit Primers (Illumina, Inc).

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
15339817
Reads aligned (%)
68.7
Duplicates removed (%)
66.2
Number of peaks
7550 (qval < 1E-05)

mm9

Number of total reads
15339817
Reads aligned (%)
68.6
Duplicates removed (%)
66.3
Number of peaks
7439 (qval < 1E-05)

Base call quality data from DBCLS SRA