Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Larvae
Cell type
Imaginal wing disc
NA
NA

Attributes by original data submitter

Sample

source_name
3rd instar larvae wing discs
genotype/variation
Act5c-Gal4 (WT)
genotype/variation
y1 w*; P{Act5C-GAL4}25FO1/CyO, y+
tissue
3rd instar larvae wing discs

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
For RNA-seq, drosophila third instar larvae wing discs from indicated genetypes were dissected into Trizol, and total RNA was extracted for the construction of sequencing libraries. For ChIP-seq, drosophila third instar larvae wing discs from Act5c-Gal4 were cross-linked, sonicated and subjected for ChIP assay with anti-H4K20me1 antibody. After reverse cross-link and protein digestion with proteinase K, the immunoprecipitated genomic DNA was extracted with DNA purification kit (QIAGEN) and for construction of sequencing libraries. ChIP-seq and unstrand RNA-seq libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm6

Number of total reads
29904815
Reads aligned (%)
63.9
Duplicates removed (%)
82.5
Number of peaks
2694 (qval < 1E-05)

dm3

Number of total reads
29904815
Reads aligned (%)
64.2
Duplicates removed (%)
81.5
Number of peaks
3170 (qval < 1E-05)

Base call quality data from DBCLS SRA