Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Monocytes-CD14+
Tissue
monocytes
Lineage
mesoderm
Description
Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), newly promoted to tier 2: not in 2011 analysis

Attributes by original data submitter

Sample

source_name
monocytes from human donnor with Acute on Chronic Liver Failure
subject status
Acute on Chronic Liver Failure
tissue
Peripheral Blood
cell type
monocyte CD14+

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
20000 to 50000 sorted monocytes were washed with cold PBS and resuspended in cold lysis buffer (10 mM Tris·Cl, pH 7.4, 10 mM NaCl,3 mM MgCl2, 0.1% (v/v) Igepal CA-630). Nuclei were subject to transposition reaction in 1x TD Buffer containing 2.5 μl transposase Nextera enzyme and DNA was purified. Purified DNA was amplified by PCR with 10-12 cycles. Amplified libraries were purified and quality controlled.

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

hg38

Number of total reads
34881362
Reads aligned (%)
61.4
Duplicates removed (%)
28.6
Number of peaks
28605 (qval < 1E-05)

hg19

Number of total reads
34881362
Reads aligned (%)
61.0
Duplicates removed (%)
28.7
Number of peaks
28429 (qval < 1E-05)

Base call quality data from DBCLS SRA