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Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Whole worm
ATCC
MeSH
RIKEN BRC
SRX6619535
tm0235-a7-H3K9me2 Input
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Adult
Cell type
Whole worm
NA
NA
Attributes by original data submitter
Sample
strain
baz2(tm0235)
age
7d
sex
pooled male and female
tissue
The whole worm
collected_by
J. Y.
treatment
tm0235-a7-H3K9me2_Input
Sequenced DNA Library
library_name
tm0235-a7-H3K9me2_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina NovaSeq 6000
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
39751115
Reads aligned (%)
72.5
Duplicates removed (%)
14.4
Number of peaks
514 (qval < 1E-05)
ce10
Number of total reads
39751115
Reads aligned (%)
72.5
Duplicates removed (%)
14.4
Number of peaks
513 (qval < 1E-05)
Base call quality data from
DBCLS SRA