SRX6619408
SW480 Wnt-low ATAC-seq rep4

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Digestive tract
Cell type
SW 480
Primary Tissue
unresolved
Tissue Diagnosis
unresolved

Attributes by original data submitter

Sample

isolate
SW480 Wnt-low ATAC-seq rep4
age
not applicable
biomaterial_provider
not applicable
sex
not applicable
tissue
not applicable
cell_line
SW480
cell_type
human colorectal cancer cells

Sequenced DNA Library

library_name
lib12
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
Illumina HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29534363
Reads aligned (%)
49.7
Duplicates removed (%)
23.1
Number of peaks
31666 (qval < 1E-05)

hg19

Number of total reads
29534363
Reads aligned (%)
49.5
Duplicates removed (%)
23.2
Number of peaks
31475 (qval < 1E-05)

Base call quality data from DBCLS SRA