Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
OCI-LY1
NA
NA

Attributes by original data submitter

Sample

source_name
OCI-Ly1-CONTROL-sg2
cell line
OCI-Ly1
genotype/variation
CONTROL (non targeting sgRNAs)

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq was performed on 50,000 cells as described (Buenrostro et al., 2013). Transposition reactions were performed for 1 hr at 37° C, followed by purification and sample barcoding by PCR.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
18559831
Reads aligned (%)
97.4
Duplicates removed (%)
69.7
Number of peaks
2916 (qval < 1E-05)

hg19

Number of total reads
18559831
Reads aligned (%)
97.2
Duplicates removed (%)
69.8
Number of peaks
2888 (qval < 1E-05)

Base call quality data from DBCLS SRA