Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Muscle
Cell type
Skeletal muscle
NA
NA

Attributes by original data submitter

Sample

source_name
skeletal muscle - soleus
strain
C57BL/6
genotype
wild type
tissue
skeletal muscle - soleus

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Skeletal muscle was dissected and snap frozen in liquid nitrogen. ATAC-seq samples were cryo-pulverized and 30mg of powdered tissue was subjected to transposase reaction as per Buenrostro et al 2013. ATAC-seq libraries were prepared as per Beunrostro et al 2013.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
102154651
Reads aligned (%)
96.3
Duplicates removed (%)
48.8
Number of peaks
9915 (qval < 1E-05)

mm9

Number of total reads
102154651
Reads aligned (%)
96.3
Duplicates removed (%)
48.9
Number of peaks
9856 (qval < 1E-05)

Base call quality data from DBCLS SRA