Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Peripheral blood T cells
tissue
Peripheral blood
disease state
Healthy T cells
treatment
N/A
chip antibody
CTCF (D31H2; Catalog no: 3418)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. libraries were prepared using Kapa Hyper prep kit (Catalog no: KK8500) following manufacturer's guidelines

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
27979938
Reads aligned (%)
53.4
Duplicates removed (%)
42.7
Number of peaks
33615 (qval < 1E-05)

hg38

Number of total reads
27979938
Reads aligned (%)
54.1
Duplicates removed (%)
42.2
Number of peaks
33770 (qval < 1E-05)

Base call quality data from DBCLS SRA