SRX652244
GSM1432934: Exp2 C2 iMEFs Ezh2 WT/WT; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
C2 iMEFs Ezh2 WT/WT
cell type
iMEFs
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted by phenol-chloroform and precipitated. Experiment 1 : Sequencing was performed on SOLiD 5500 single reads 75bp. Experiment 2 : Sequencing was performed on Hi-Seq 2500 Illumina single reads 100bp.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
34116916
Reads aligned (%)
99.2
Duplicates removed (%)
15.2
Number of peaks
187 (qval < 1E-05)

mm9

Number of total reads
34116916
Reads aligned (%)
99.0
Duplicates removed (%)
15.2
Number of peaks
145 (qval < 1E-05)

Base call quality data from DBCLS SRA