SRX651506
GSM1435531: FB2555 H3K4me3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Others
Cell type
Fibroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
Fibroblasts
cell type
Fibroblast primary cell line
chip antibody
H3K4me3 (Diagenode; #pAb-003-050)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to the Illumina TruSeq protocol, and quality assessed by Agilent 2100 BioAnalyzer.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
92681461
Reads aligned (%)
99.2
Duplicates removed (%)
2.0
Number of peaks
60779 (qval < 1E-05)

hg19

Number of total reads
92681461
Reads aligned (%)
98.8
Duplicates removed (%)
2.1
Number of peaks
59738 (qval < 1E-05)

Base call quality data from DBCLS SRA