Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
pooled
cell type
pooled
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were processed by Active Motif via a standard ChIPseq protocol to enrich for RNAPII bound regions of DNA. Replicate RNA Pol II ChIP reactions were performed using 25 μg of primary MEF, 6F, and DDRR chromatin and 4 μg of Abflex RNAPII antibody (Active Motif, cat # 91151). Libraries were generated via standard Illumina protocols (using NextSeq 500) and sequenced to generate 30M reads per sample.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
40670134
Reads aligned (%)
96.8
Duplicates removed (%)
22.7
Number of peaks
492 (qval < 1E-05)

mm9

Number of total reads
40670134
Reads aligned (%)
96.6
Duplicates removed (%)
22.7
Number of peaks
430 (qval < 1E-05)

Base call quality data from DBCLS SRA