Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
Jurkat
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
Jurkat culture cells_H3K27ac_sodium_butirate
cell line
Jurkat
chip antibody
H3K27ac (Abcam, ab4729)
antibody manufacturer
Abcam
antibody catalog number
ab4729
treatment
Sodium butirate

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin Immunoprecipitation with antibodies against specific histone modifications. Libraries were prepared according to manufacturer's instructions using Illumina TrueSeq ChIP-seq Library Preparation Kit (Ref # 15034288). At least 1ng DNA was used for each library preparation.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
49455938
Reads aligned (%)
97.1
Duplicates removed (%)
14.5
Number of peaks
16878 (qval < 1E-05)

hg19

Number of total reads
49455938
Reads aligned (%)
96.8
Duplicates removed (%)
14.7
Number of peaks
16831 (qval < 1E-05)

Base call quality data from DBCLS SRA