SRX6484605
MEFs

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

Replicate Information
Replicate2
Sample type
ATAC-DNA
strain
IFNAR-KO
dev_stage
Embryonic
sex
not applicable
tissue
MEFs
Stimulation
LPS
Time
1h

Sequenced DNA Library

library_name
IFNAR-L1_Rep2_ATAC
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
15878771
Reads aligned (%)
90.0
Duplicates removed (%)
55.1
Number of peaks
2971 (qval < 1E-05)

mm9

Number of total reads
15878771
Reads aligned (%)
89.9
Duplicates removed (%)
55.2
Number of peaks
2969 (qval < 1E-05)

Base call quality data from DBCLS SRA