SRX6484595
MEFs

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

Replicate Information
Replicate1
Sample type
ATAC-DNA
strain
IFNAR-IKBA-KO
dev_stage
Embryonic
sex
not applicable
tissue
MEFs
Stimulation
TNF
Time
1h

Sequenced DNA Library

library_name
IFNAR-IKBA-T1_Rep1_ATAC
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10899455
Reads aligned (%)
90.6
Duplicates removed (%)
57.3
Number of peaks
5112 (qval < 1E-05)

mm9

Number of total reads
10899455
Reads aligned (%)
90.6
Duplicates removed (%)
57.4
Number of peaks
5180 (qval < 1E-05)

Base call quality data from DBCLS SRA