SRX6481997
GSM3959433: PML ChIP-seq Input-1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
AML12
Tissue
Liver
Cell Type
Hepatocyte
Disease
Normal

Attributes by original data submitter

Sample

source_name
shCtrl
cell line
AML12 cells
genotype/variation
shCtrl
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
PML ChIP was done as previously described (Lund et al., 2014) from 5×10^6 cells. Illumina sequencing library were prepared according to the standard Illumina protocol.

Sequencing Platform

instrument_model
Illumina HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
35037092
Reads aligned (%)
96.2
Duplicates removed (%)
31.5
Number of peaks
652 (qval < 1E-05)

mm9

Number of total reads
35037092
Reads aligned (%)
96.0
Duplicates removed (%)
31.6
Number of peaks
637 (qval < 1E-05)

Base call quality data from DBCLS SRA