Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
Aortic smooth muscle cells
NA
NA

Attributes by original data submitter

Sample

source_name
primary cells
cell type
HASMC (Human Aortic Smooth Muscle Cells)
passages
10
chip antibody
none
treatment
PBS input control

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
19439146
Reads aligned (%)
94.0
Duplicates removed (%)
1.8
Number of peaks
941 (qval < 1E-05)

hg19

Number of total reads
19439146
Reads aligned (%)
92.3
Duplicates removed (%)
1.8
Number of peaks
359 (qval < 1E-05)

Base call quality data from DBCLS SRA