Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural crests
NA
NA

Attributes by original data submitter

Sample

source_name
H9_CNCC_V5_ChIP
cell type
ES-derived cranial neural crest cells (CNCCs)
cell line of origin
H9 ESCs (WA09)
srcap crispr edit
unedited
chip antibody
V5 (Abcam, 15828)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
45686259
Reads aligned (%)
96.6
Duplicates removed (%)
9.7
Number of peaks
2427 (qval < 1E-05)

hg19

Number of total reads
45686259
Reads aligned (%)
95.7
Duplicates removed (%)
10.0
Number of peaks
1611 (qval < 1E-05)

Base call quality data from DBCLS SRA