SRX6468497
GSM3954673: brat RNAi numb RNAi neuroblasts replicate 1 (input H3K4me3); Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Larvae
Cell type
Neural stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
neural stem cells
cell type
tumor neuroblasts
tissue
L3 larval brain

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NBs and neurons were isolated according to Harzer et. Al (2013, Nature protocols). Samples were MNase treated. Libraries were prepared according to Bowman et. Al (2013 BMC Genomics).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
32051351
Reads aligned (%)
72.4
Duplicates removed (%)
49.5
Number of peaks
2083 (qval < 1E-05)

dm3

Number of total reads
32051351
Reads aligned (%)
73.2
Duplicates removed (%)
45.7
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA