Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Neural

Cell type

Glioma

MeSH Description

Benign and malignant central nervous system neoplasms derived from glial cells (i.e., astrocytes, oligodendrocytes, and ependymocytes). Astrocytes may give rise to astrocytomas (ASTROCYTOMA) or glioblastoma multiforme (see GLIOBLASTOMA). Oligodendrocytes give rise to oligodendrogliomas (OLIGODENDROGLIOMA) and ependymocytes may undergo transformation to become EPENDYMOMA; CHOROID PLEXUS NEOPLASMS; or colloid cysts of the third ventricle. (From Escourolle et al., Manual of Basic Neuropathology, 2nd ed, p21)

Sample

source_name

TS543 glioma cells

agent

DMSO

genotype

TS543

cell type

glioma cells

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

ATAC-seq was performed.

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

54243934

Reads aligned (%)

100.0

Duplicates removed (%)

0.0

Number of peaks

220 (qval < 1E-05)

hg19

Number of total reads

54243934

Reads aligned (%)

100.0

Duplicates removed (%)

0.0

Number of peaks

247 (qval < 1E-05)