SRX6457552
GSM3946548: OmniATAC MM057 untreated; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Epidermis
Cell type
Melanoma cell line
NA
NA

Attributes by original data submitter

Sample

source_name
melanoma cell line
tissue
melanoma cell line
cell line
MM057
treatment
no treatment
sequencing method
Omni-ATAC-Seq

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Not Provided

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25910636
Reads aligned (%)
94.1
Duplicates removed (%)
9.8
Number of peaks
75137 (qval < 1E-05)

hg19

Number of total reads
25910636
Reads aligned (%)
93.6
Duplicates removed (%)
10.1
Number of peaks
74603 (qval < 1E-05)

Base call quality data from DBCLS SRA