Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD8+ T-cells
strain
C57BL/6J
treatment
CD4-depleting antibody
infection
LCMV Clone 13
time point
8 days post-infection
cell type
Transferred Ptpn2-guide P14+ Slamf6+ CD8+ T cells

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
CD8+ MACS positive selection was performed on single-cell suspensions of splenocytes from chronically infected mice, followed by FACS. Library construction was performed as per standard ATAC-seq protocol, as outlined in Corces et al., Nature Genetics 2016.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
23533917
Reads aligned (%)
90.2
Duplicates removed (%)
9.0
Number of peaks
23392 (qval < 1E-05)

mm9

Number of total reads
23533917
Reads aligned (%)
90.1
Duplicates removed (%)
9.2
Number of peaks
23373 (qval < 1E-05)

Base call quality data from DBCLS SRA