Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
Kras maintained ADM and panIN
strain
B6/FVB
genotype
Pdx1-cre;Klf5-mCherry-CreERT2;LSL-KrasG12D;R26RLSL-YFP
days after injection
day 7

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Mouse pancreases were digested into single cell suspensions as previously described (Reichert et al., 2013a) Libraries were prepared according to TruePrepTM DNA Library Prep Kit V2 for Illumina(Vazyme,TD502). ATAC-seq was performed using 3000 cells isolated from each mouse as described (Wu et al., 2016)

Sequencing Platform

instrument_model
Illumina HiSeq X Ten

mm10

Number of total reads
11970554
Reads aligned (%)
67.6
Duplicates removed (%)
25.5
Number of peaks
10575 (qval < 1E-05)

mm9

Number of total reads
11970554
Reads aligned (%)
67.5
Duplicates removed (%)
25.5
Number of peaks
10562 (qval < 1E-05)

Base call quality data from DBCLS SRA