ChIP-Atlas: SRX6437826

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: ATAC-Seq
Antigen: ATAC-Seq

Cell type

Cell type Class: Pancreas
Cell type: Pancreatic duct cells
NA: NA

Attributes by original data submitter

Sample

source_name: pancreatic "normal' duct cell
strain: B6/FVB
genotype: Pdx1-cre;Klf5-mCherry-CreERT2;LSL-KrasG12D;R26RLSL-YFP
days after injection: day 0

Sequenced DNA Library

library_strategy: ATAC-seq
library_source: GENOMIC
library_selection: other
library_construction_protocol: Mouse pancreases were digested into single cell suspensions as previously described (Reichert et al., 2013a) Libraries were prepared according to TruePrepTM DNA Library Prep Kit V2 for Illumina(Vazyme,TD502). ATAC-seq was performed using 3000 cells isolated from each mouse as described (Wu et al., 2016)

Sequencing Platform

instrument_model: Illumina HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 11962046
Reads aligned (%): 71.7
Duplicates removed (%): 35.8
Number of peaks: 14078 (qval < 1E-05)

mm9

Number of total reads: 11962046
Reads aligned (%): 71.7
Duplicates removed (%): 35.8
Number of peaks: 14065 (qval < 1E-05)

Base call quality data from DBCLS SRA