Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Natural Killer T-Cells
MeSH Description
A specific natural killer T-cell subtype that expresses an invariant T-cell receptor alpha-chain.

Attributes by original data submitter

Sample

source_name
Thymus
strain
C57BL/6J
tissue
Thymus
genotype
Bcl6KO
developmental stage
Stage 1 iNKT cells

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
13509788
Reads aligned (%)
88.9
Duplicates removed (%)
36.7
Number of peaks
35368 (qval < 1E-05)

mm9

Number of total reads
13509788
Reads aligned (%)
88.8
Duplicates removed (%)
36.8
Number of peaks
35365 (qval < 1E-05)

Base call quality data from DBCLS SRA