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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: Midgut
ATCC
MeSH
RIKEN BRC
SRX6430379
iso-1 in nonstress conditions for ATAC-seq replicate 2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Adult
Cell type
Midgut
NA
NA
Attributes by original data submitter
Sample
strain
iso-1
age
4-6 days
dev_stage
Adult
sex
female
tissue
Midgut
treatment
None
replicate
412A
Sequenced DNA Library
library_name
412A
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
30683773
Reads aligned (%)
83.0
Duplicates removed (%)
14.0
Number of peaks
5323 (qval < 1E-05)
dm3
Number of total reads
30683773
Reads aligned (%)
83.1
Duplicates removed (%)
12.0
Number of peaks
0 (qval < 1E-05)
Base call quality data from
DBCLS SRA