SRX6430374
RAL-177 in stress conditions for ATAC-seq replicate 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Adult
Cell type
Midgut
NA
NA

Attributes by original data submitter

Sample

strain
RAL-177
age
4-6 days
dev_stage
Adult
sex
female
tissue
Midgut
treatment
Exposure to malathion at 20uM for 9 hours
replicate
223A

Sequenced DNA Library

library_name
223A
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
27421116
Reads aligned (%)
92.3
Duplicates removed (%)
21.4
Number of peaks
2170 (qval < 1E-05)

dm3

Number of total reads
27421116
Reads aligned (%)
92.4
Duplicates removed (%)
19.1
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA