Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Pluripotent stem cell

Cell type

ES cells

NA

NA

Sample

source_name

mESC

chip antibody

Input

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP experiments were performed according to standard protocols as described previously (Ferrari et al., 2014) DNA libraries were prepared with 2–10 ng of DNA using an in-house protocol (Blecher-Gonen et al., 2013) by the IEO genomic facility

Sequencing Platform

instrument_model

Illumina NovaSeq 6000

mm10

Number of total reads

4115376

Reads aligned (%)

95.1

Duplicates removed (%)

7.6

Number of peaks

96 (qval < 1E-05)

mm9

Number of total reads

4115376

Reads aligned (%)

94.9

Duplicates removed (%)

8.2

Number of peaks

95 (qval < 1E-05)