Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
Forelimb
MeSH Description
A front limb of a quadruped. (The Random House College Dictionary, 1980)

Attributes by original data submitter

Sample

source_name
Forelimb
strain
C57BL/6
tissue
Forelimb
developmental stage
E10.5

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Around 500 E10.5 (36so) wild-type FLs and 500 E10.5 wild-type HLs were fixed according to standard procedures for ChIP experiments. For the IP, we used ChIP-IT High Sensitivity Columns (Active Motif). Two anti-Meis antibodies were used simultaneously, one recognizing Meis1a and Meis2a,c and the other recognizing all Meis1 isoforms. ChIP-seq libraries were generated using the NEBNext Ultra DNA Library Prep Kit for Illumina and sequenced (single-end mode and length of 50 bp) on a HiSeq 2500 (Illumina)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
56591155
Reads aligned (%)
92.8
Duplicates removed (%)
47.2
Number of peaks
811 (qval < 1E-05)

mm9

Number of total reads
56591155
Reads aligned (%)
92.6
Duplicates removed (%)
47.3
Number of peaks
818 (qval < 1E-05)

Base call quality data from DBCLS SRA