Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K79me2

Cell type

Cell type Class
Blood
Cell type
KMT2A-MLLT3 leukemia cells
NA
NA

Attributes by original data submitter

Sample

source_name
KMT2A-MLLT3 leukemia cells with low levels of DOT1L overexpressed
disease state
KMT2A-MLLT3 AML
spike-in
drosophila melanogaster (S2) cells spiked in at a 1:2 ratio
treatment
DOT1L transduction
cell population
low expressing population
chip antibody
H3K79me2 (Abcam: ab3594)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Briefly, samples were crosslinked, lysed, sonicated and immunoprecipated with H3K79me2 overnight. After a series of washes they were reverse crosslinked overnight and DNA extracted. Library prep was performed using Illumina HiSeq, 2x150bp configuration, single index, per lane. ~350M raw paired-end reads per lane

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
42983849
Reads aligned (%)
86.6
Duplicates removed (%)
10.0
Number of peaks
187 (qval < 1E-05)

mm9

Number of total reads
42983849
Reads aligned (%)
86.5
Duplicates removed (%)
10.0
Number of peaks
146 (qval < 1E-05)

Base call quality data from DBCLS SRA