Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
Germinal center B-cells
NA
NA

Attributes by original data submitter

Sample

source_name
Germinal center B cells
cell type
Germinal center B cells
sorting strategy
Classic GC DZ and LZ B cells were sorted using FACS. Classic GC DZ B cells were defined as B220+GL7+CD95+CXCR4+CD83lo, and classic GC LZ B cells were defined as B220+GL7+CD95+CXCR4loCD83+.
chip antibody
H3K27Ac

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin from the indicated flow sorted GC B cell population (1-2 million cells) was used for each ChIP experiment with anti-H3K4me1 (Millipore 07-436) or anti-H3K27Ac (Abcam ab4729) antibody. DNA libraries were prepared by tagmentation from the sheared chromatin (200–600 bp). Libraries were sequenced on the Illumina Hiseq4000.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
54070663
Reads aligned (%)
88.2
Duplicates removed (%)
11.8
Number of peaks
693 (qval < 1E-05)

mm9

Number of total reads
54070663
Reads aligned (%)
88.1
Duplicates removed (%)
11.9
Number of peaks
749 (qval < 1E-05)

Base call quality data from DBCLS SRA