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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: Unclassified
ATCC
MeSH
RIKEN BRC
SRX6373309
ATAC-seq of mouse ES cells: wildtype, SSEA-1 high
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Unclassified
Cell type
Unclassified
NA
NA
Attributes by original data submitter
Sample
isolate
embryonic stem cells
age
not applicable
sex
male
tissue
not applicable
genotype
Wildtype
fraction
SSEA-1 high
Sequenced DNA Library
library_name
4
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
45952104
Reads aligned (%)
75.1
Duplicates removed (%)
26.1
Number of peaks
16247 (qval < 1E-05)
mm9
Number of total reads
45952104
Reads aligned (%)
75.1
Duplicates removed (%)
26.2
Number of peaks
16024 (qval < 1E-05)
Base call quality data from
DBCLS SRA