SRX6373307
ATAC-seq of mouse ES cells: Smarcb1 KO, SSEA-1 low

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

isolate
embryonic stem cells
age
not applicable
sex
male
tissue
not applicable
genotype
Smarcb1 KO
fraction
SSEA-1 Low

Sequenced DNA Library

library_name
6
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
33217377
Reads aligned (%)
71.2
Duplicates removed (%)
29.7
Number of peaks
3440 (qval < 1E-05)

mm9

Number of total reads
33217377
Reads aligned (%)
71.1
Duplicates removed (%)
29.8
Number of peaks
3415 (qval < 1E-05)

Base call quality data from DBCLS SRA