SRX6369396
GSM3907486: D226G FOXA1 ChIP-Seq 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP
cell type
prostate cancer cell line

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries construction was performed using ThruPLEX DNA-seq 48D Kit (Rubicon Genomics)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17171739
Reads aligned (%)
7.8
Duplicates removed (%)
38.4
Number of peaks
126 (qval < 1E-05)

hg19

Number of total reads
17171739
Reads aligned (%)
7.7
Duplicates removed (%)
39.6
Number of peaks
134 (qval < 1E-05)

Base call quality data from DBCLS SRA