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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNA polymerase II
wikigenes
PDBj
CellType: LX2
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX612509
GSM1416814: PolII S2P-ChIP + JQ1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
RNA polymerase
Antigen
RNA polymerase II
Cell type
Cell type Class
Liver
Cell type
LX2
NA
NA
Attributes by original data submitter
Sample
source_name
human LX2 cells
cell type
human hepatic stellate cells
cell line
LX-2
chip antibody
PolII-s2p
treatment
JQ1 (500nM)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard Illumina DNA library construction
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
9012945
Reads aligned (%)
97.5
Duplicates removed (%)
5.6
Number of peaks
1419 (qval < 1E-05)
hg19
Number of total reads
9012945
Reads aligned (%)
97.3
Duplicates removed (%)
5.7
Number of peaks
1408 (qval < 1E-05)
Base call quality data from
DBCLS SRA