SRX612508
GSM1416813: PolII S2P-ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Liver
Cell type
LX2
NA
NA

Attributes by original data submitter

Sample

source_name
human LX2 cells
cell type
human hepatic stellate cells
cell line
LX-2
chip antibody
PolII-s2p
treatment
DMSO (0.1%)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard Illumina DNA library construction

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9659028
Reads aligned (%)
96.6
Duplicates removed (%)
6.2
Number of peaks
1063 (qval < 1E-05)

hg19

Number of total reads
9659028
Reads aligned (%)
96.4
Duplicates removed (%)
6.3
Number of peaks
1062 (qval < 1E-05)

Base call quality data from DBCLS SRA