SRX612507
GSM1416812: PolII-ChIP + JQ1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Liver
Cell type
LX2
NA
NA

Attributes by original data submitter

Sample

source_name
human LX2 cells
cell type
human hepatic stellate cells
cell line
LX-2
chip antibody
PolII
treatment
JQ1 (500nM)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard Illumina DNA library construction

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10909161
Reads aligned (%)
96.3
Duplicates removed (%)
4.5
Number of peaks
3048 (qval < 1E-05)

hg19

Number of total reads
10909161
Reads aligned (%)
95.7
Duplicates removed (%)
4.9
Number of peaks
3031 (qval < 1E-05)

Base call quality data from DBCLS SRA