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Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: BRD3
wikigenes
PDBj
CellType: LX2
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX612502
GSM1416807: BRD3-ChIP; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
BRD3
Cell type
Cell type Class
Liver
Cell type
LX2
NA
NA
Attributes by original data submitter
Sample
source_name
human LX2 cells
cell type
human hepatic stellate cells
cell line
LX-2
chip antibody
BRD3
treatment
DMSO (0.1%)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard Illumina DNA library construction
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
9390481
Reads aligned (%)
92.7
Duplicates removed (%)
4.3
Number of peaks
3277 (qval < 1E-05)
hg38
Number of total reads
9390481
Reads aligned (%)
93.9
Duplicates removed (%)
3.6
Number of peaks
3240 (qval < 1E-05)
Base call quality data from
DBCLS SRA