SRX610672
GSM1415630: Wt; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Uterus
Cell type
Ovarian granulosa cells
NA
NA

Attributes by original data submitter

Sample

source_name
GC
transduction
Wt AR-HA
cell type
primary ovarian granulosa cells
chip-antibody
HA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and AR-HA-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21367099
Reads aligned (%)
89.8
Duplicates removed (%)
21.3
Number of peaks
480 (qval < 1E-05)

hg19

Number of total reads
21367099
Reads aligned (%)
89.3
Duplicates removed (%)
22.0
Number of peaks
533 (qval < 1E-05)

Base call quality data from DBCLS SRA