ChIP-Atlas: SRX6102347

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Histone
Antigen: H3K27ac

Cell type

Cell type Class: Pancreas
Cell type: EndoC-BH1
NA: NA

Attributes by original data submitter

Sample

source_name: EndoC-βH1
treatment: IFN-gamma + IL-1beta 48h
chip antibody: H3K27ac (Abcam ab4729)

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. ChIP-seq libraries were prepared using standard Illumina protocols

Sequencing Platform

instrument_model: Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 69134255
Reads aligned (%): 99.2
Duplicates removed (%): 24.7
Number of peaks: 28455 (qval < 1E-05)

hg19

Number of total reads: 69134255
Reads aligned (%): 99.0
Duplicates removed (%): 24.8
Number of peaks: 28460 (qval < 1E-05)

Base call quality data from DBCLS SRA