SRX6079486
GSM3895102: WT preB; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Pre-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
preB cells
genotype
Ergfl/fl

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Nuclei were extracted using a cytoplasmic lysis buffer. Extracted nuclei were tagmented using the Tn5 enzyme from the Nextera DNA library preparation Kit.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
67555364
Reads aligned (%)
83.6
Duplicates removed (%)
38.5
Number of peaks
42102 (qval < 1E-05)

mm9

Number of total reads
67555364
Reads aligned (%)
83.5
Duplicates removed (%)
38.6
Number of peaks
42017 (qval < 1E-05)

Base call quality data from DBCLS SRA