SRX6069723
GSM3890850: scWAT, 20 weeks, RNAPol-II, high fat diet, rep 1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Adipocyte
Cell type
Subcutaneous adipose tissue
NA
NA

Attributes by original data submitter

Sample

source_name
subcutaneous adipose tissue
strain
C57BL/6
tissue
subcutaneous (inguinal) white adipose tissue (scWAT)
age
26 weeks old
diet
High fat diet (D12492)
time
20 weeks
replicate
1
chip antibody
RNAPol-II (Santa-Cruz, SC-67318)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
66024595
Reads aligned (%)
85.2
Duplicates removed (%)
25.4
Number of peaks
15910 (qval < 1E-05)

mm9

Number of total reads
66024595
Reads aligned (%)
85.0
Duplicates removed (%)
25.4
Number of peaks
15911 (qval < 1E-05)

Base call quality data from DBCLS SRA