SRX6068029
GSM3889360: EFKD H3K4me3 rep3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Bone
Cell type
A-673
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
Rhabdomyosarcoma

Attributes by original data submitter

Sample

source_name
A673 cells
cell line
A673
transduced shrna
iEF
antibody
H3K4me3
replicate
3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Histone ChIP NEBNext

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30473800
Reads aligned (%)
97.4
Duplicates removed (%)
38.9
Number of peaks
21331 (qval < 1E-05)

hg19

Number of total reads
30473800
Reads aligned (%)
97.2
Duplicates removed (%)
39.4
Number of peaks
21315 (qval < 1E-05)

Base call quality data from DBCLS SRA