SRX6061019
GSM3886342: EAC-T10 INPUT; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Esophageal adenocarcinoma
NA
NA

Attributes by original data submitter

Sample

source_name
Esophageal Adenocarcinoma tissue
cell line
EAC-T10
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Standard Illumina library preparation protocol

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20414597
Reads aligned (%)
76.2
Duplicates removed (%)
2.9
Number of peaks
491 (qval < 1E-05)

hg19

Number of total reads
20414597
Reads aligned (%)
75.3
Duplicates removed (%)
3.0
Number of peaks
309 (qval < 1E-05)

Base call quality data from DBCLS SRA