SRX6060993
GSM3886316: OE33 INPUT; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
OE33
Primary Tissue
Esophagus
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Esophageal Adenocarcinoma cell line
cell line
OE33
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Standard Illumina library preparation protocol

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25971510
Reads aligned (%)
99.0
Duplicates removed (%)
8.1
Number of peaks
762 (qval < 1E-05)

hg19

Number of total reads
25971510
Reads aligned (%)
98.2
Duplicates removed (%)
9.2
Number of peaks
870 (qval < 1E-05)

Base call quality data from DBCLS SRA