SRX6045669
GSM3877878: IgG-ChIP-seq 2T-IgG 6818; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Epidermis
Cell type
Dermal fibroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
transformed mouse skin fibroblasts, variant #2
cell type
transformed mouse skin fibroblasts, variant #2
cell culture viarians
#2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
SimpleChip Kit #9003 (Cell Signaling) was used for preparation DNA samples for library

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
26803568
Reads aligned (%)
86.3
Duplicates removed (%)
43.3
Number of peaks
141 (qval < 1E-05)

mm9

Number of total reads
26803568
Reads aligned (%)
85.8
Duplicates removed (%)
44.1
Number of peaks
160 (qval < 1E-05)

Base call quality data from DBCLS SRA