SRX6045648
GSM3877857: SSRP1 ChIP-seq 2I-SSRP1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ssrp1

Cell type

Cell type Class
Epidermis
Cell type
Dermal fibroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
immortalized mouse skin fibroblasts, variant # 2
cell type
immortalized mouse skin fibroblasts
cell culture viarians
# 2
chip-antibody
SSRP1 (BioLegend, 609702, 10D1)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
SimpleChip Kit #9003 (Cell Signaling) was used for preparation DNA samples for library

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
44787251
Reads aligned (%)
97.9
Duplicates removed (%)
22.8
Number of peaks
206 (qval < 1E-05)

mm9

Number of total reads
44787251
Reads aligned (%)
97.8
Duplicates removed (%)
22.9
Number of peaks
184 (qval < 1E-05)

Base call quality data from DBCLS SRA